All nine valves operate manually at the valve boxes, but nothing works from the controller. The display functions normally, programs can be set, but manual activation from the controller produces only clicking sounds with no water flow.
Since water reaches the valves (manual operation works), the issue is electrical. Follow this diagnostic sequence:
With a multimeter set to VAC, measure between terminal #1 and Common (C) while zone 1 is activated. You should see 22-26 VAC. If not, the controller or its transformer is faulty.
If controller output is good, measure at the zone 1 solenoid wires (disconnected from solenoid). Same 22-26 VAC expected. If voltage drops here, there's a wiring break or bad splice between controller and valve.
If voltage is good at the valve, the solenoid or diaphragm is defective. Measure solenoid resistance (20-60 ohms). If resistance is good, replace the diaphragm.
Since no zones work from the controller, the problem is almost certainly at the controller output or the common wire path - not individual solenoids or diaphragms (all nine failing simultaneously is extremely unlikely).
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