Brownish spots/streaks on tomato seedlings—worse on early-planted ones—could be bacterial spot, early blight, or even physiological (cold injury). Microscope "blisters" need clarification.
With details, a diagnosis and seed-treatment advice can be given.
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Tomato Spotted Wilt Virus vs. Early Blight: How to Tell and What to Do
Diagnosing Brown Blotches on Greenhouse Tomatoes: Not Mosaic Virus
Phyllosticta Leaf Spot on Maple: The 'Lunar Eclipse' Fungus
Pine Disease in Neighborhood: Get Forester Visit
Spots on Phalaenopsis Flower Petals: Natural Aging
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