Softening stem + yellowing leaves = stem rot caused by overwatering. Pruning didn't cause this—removing leaves reduced transpiration, but the root zone was already anaerobic. The pathogen (usually Pythium or Phytophthora) moves up from rotting roots into the stem.
Usually not. Once stem tissue softens, the vascular system is compromised. However, if only a section is soft:
More plants die from overwatering than all other causes combined. Roots need oxygen as much as water. The "dry down" period is when roots breathe. No dry down = suffocation = rot.
Change your watering habits now, and your next plant will thrive. This one is a hard lesson, but a valuable one.
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