Your black-eyed Susans (Rudbeckia) have blackened foliage, and you're also asking about deadheading yellow daylilies. Let's tackle the fungal issue first—it's the primary concern.
Almost certainly a fungal leaf spot—common culprits are Septoria rudbeckiae or Cercospora species. Symptoms: small, dark brown to black spots with yellow halos, expanding to blotches, often starting on lower leaves and moving up. Favored by:
Yes—snap off each spent flower (including the ovary) daily. Cut finished scapes to the ground. This encourages rebloom on repeat varieties and keeps plants tidy. It won't hurt non-rebloomers either.
Note: Black-eyed Susans prefer hot, dry, well-drained conditions. If your site is damp or shady, consider moving them.
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