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Brown Spots Inside Green Apples: Disease or Physiological Issue?

Possible Causes

Internal brown spots on some apples (while others on same tree are fine) suggest:

  • Bitter rot, anthracnose, or scab—fungal diseases.
  • Physiological disorder—like cork spot or Jonathan spot from calcium imbalance.
  • Insect damage—stink bug feeding creates corky spots.

Next Steps

  1. Send clear close-up photos of cut fruit to your extension service.
  2. Compare with Google Images for the diseases above.
  3. Sanitation: Remove all fallen fruit and leaves each fall to reduce disease carryover.

Multi-Graft Tree Note

Since only one variety (green apples) is affected, it's likely variety-specific susceptibility, not a whole-tree issue.

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