The green "splatter" on your magnolia and dogwood trunks is lichens—harmless, not a disease. They indicate good air quality and don't harm the trees.
Poor flowering on dogwoods is likely from dogwood anthracnose (see previous) or powdery mildew, not lichens. Lichens are just bystanders on stressed trees.
Lichens need no treatment. Focus on the dogwood's actual problems (anthracnose/mildew) and proper magnolia care.
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